Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015855303.1_cds_XP_016512797.1_25406
CDS Infomation

[gene=LOC107829846] [db_xref=GeneID:107829846] [protein=RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like] [protein_id=XP_016512797.1] [location=complement(join(33765..33962,36983..37246,37694..37930,38389..38535,38670..39383))] [gbkey=CDS]
Sequence

ATGGGAGTTGTGACTGTTTCTAGCTCTGCTTCTCGGAGTCCATTGGGATTGAGCACAAGT
TTTTCTGCTCATTTATGTCCGCTTAAAAGGCCTGTAGTTGTATCATTTAAAAAAGATAAA
ACGAAAAAAACAACTTTAGTTGCACCTAAGGAATCCATATCGTTGCCTATAGAAACATCT
AAAGAGAATGAAAAGAGGTCAAGACGAGTATCTAAACGTACTGAGAGAGTGCATGCTGTT
TCAATTGATATTGAAGCATCTCCAAGTACGTTAGAGTTGGACTATAGTGAAGCTGCTGCC
AAACTTGAAAGTATCTACAAGCGCAGTCTGGAAACAGATAGTTCCGATACAGAAGCTAAG
GATCATCAAATCGTGAAGAGAAGGCAAAGGACGAGGAAGAGAATTATAGAAGGCAATGAG
GAAGCGAAGAAGGGAATTGCTGATAATGTGGTCAAGAATCGTCGAAAGAAATCAAAGCGG
CTGAATCTTGACCAGAGGATTGCTCTGCTAAAGAATAAAGAAGGTGAATTGGTTGCTTCA
TCCCAAAAAAGAGAACTTAAAGAGGACACCGAAGATGAAAAAATTGATAAGCTTGTCAGA
GAATATTCAGGTGCTACTGACTTAGCGAGCTTAGACTGGAAGAAAATGAAGATCCCTCCA
GTGCTTCCATCTTCTGAGCATGCGTGGCTCTTCAAGTTGATGCAACCTATGAAGGCTATC
CTTCAAGTGAAGGAGAACTTGCAAAATGATTTGGGGCGAGAACCAACTGACGCTGAAGTA
GCTGAGGCAACAAATATCGATGCCTCCGAACTACGGAAAAATTTGGAAGTTGGTCGAGCT
GCCAGAAATAAGCTGATTAAGCACAATCTACGTCTTGTTTTGTTCGTGATAAACAAATAT
TTTCAAGATTTTGCTAATGGGCCAAAATTCCAAGACCTCTGTCAGGCAGGCGTCAAGGGA
CTAATTACAGCTATTGATCGATTTGAACCTAATAGGAAATTCAGACTGTCAACATATGGT
CTTTTTTGGATAAGGCATGCCATAATACGTTCTATGACAACCTCAAGCTTCACCAAAGTC
CCATTCGGGCTTGAATCTATCAGAGTAGAAATTCAGAAGGCCAAATTGCAGCTGCTATTT
GAGCTTCAGAGGATGCCAACAGATGAAGAGATAATTGAAAGAGTTAGACTTTCCCCTGAG
AGATACCATGAAGTGATGAAAGTATCAAAACCTGTCTTCTCTCTCCATGCAAGACACATG
ACGACCCAAGAAGAGTTTATTAATGGAATAACTGATGTAGATGGCGTAGATGGGGTTAAG
AGGAAGCAACCAGCTCTACTCAGGCTTGCTCTTGATGATGTGCTTGATTCTCTTAAGCCC
AAGGAGAGTCTAGTAATCAGACAAAGATATGGACTTGATGGCAAAGGTAATAGAACATTG
GGAGAAATTGCGGGTAACCTAAATATTTCGAGAGAGATGGTACGGAAGCATGAAGTGAAG
GCTCTCATGAAGCTCAAGCATCCAACTCGAGTAGATTATCTTCGCCGGTACATATTCTAA

Peptide Sequence

PEP ID

XP_016512797.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MGVVTVSSSASRSPLGLSTSFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS
KENEKRSRRVSKRTERVHAVSIDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEAK
DHQIVKRRQRTRKRIIEGNEEAKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVAS
SQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAI
LQVKENLQNDLGREPTDAEVAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKY
FQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV
PFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHM
TTQEEFINGITDVDGVDGVKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTL
GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYIF

Transcript Sequence

Gene sequence data has not been registered.